COLLEGE OF MEDICINE AND HEALTH
Medicine, Nursing and Allied Health Professions

Loading content

Garan Jones

PhD Student

 RILD Building L3/24

 

University of Exeter Medical School, RILD Building, RD&E Hospital Wonford, Barrack Road, Exeter, EX2 5DW, UK

Garan joined Public Health England (formerly the Health Protection Agency) in 2008 as a Bioinformatician working with the European Working Group on Legionella Infection (EWGLI), specialising in sequence based typing of Legionella. In late 2009, Garan moved groups to the Gastrointestinal, Enteric and Zoonotic Infections (GEZI) department as a Bioinformatician focused on the epidemiology of various pathogen outbreaks including Escherichia Coli, Campylobacter Jejuni and zoonotic pathogens. This was followed in 2012 with a relocation to the International Microinjection Tracking System (IMiTS) at the Wellcome Trust Sanger Institute in Cambridge as a Senior Developer, before moving to Exeter to complete an MRes in Bioinformatics. Following which Garan spent 4 year working in Clinical Bioinformatics with the NHS based at the Royal Devon & Exeter, mainly working on Targeted / Exome Next Generation Sequencing and rare disease analysis.

 

Qualifications

  • BSc(Hons) Molecular Cell Biology, University of Southampton
  • PgDip Medical Molecular Genetics, Aberdeen University
  • MSc Computer Science, University of Swansea
  • MRes Bioinformatics, University of Exeter

Research

Research interests

Currently working on UK Biobank analysis with Dr. Luke Pilling and Prof. David Melzer. Includes looking at the associations between genotypes and phenotypes related to aging, such as Sarcopenia and low lung function.

 

Inflammation and its impact on aging; Rare disease and sequencing; Bioinformatics; Research software development

Key publications | Publications by category | Publications by year

Publications by category


Journal articles

Stals KL, Wakeling M, Baptista J, Caswell R, Parrish A, Rankin J, Tysoe C, Jones G, Gunning AC, Lango Allen H, et al (In Press). Diagnosis of lethal or prenatal-onset autosomal recessive disorders by parental exome sequencing. Prenat Diagn, 38(1), 33-43. Abstract.  Author URL.
De Franco E, Flanagan SE, Yagi T, Abreu D, Mahadevan J, Johnson MB, Jones G, Acosta F, Mulaudzi M, Lek N, et al (In Press). Dominant ER Stress-Inducing WFS1 Mutations Underlie a Genetic Syndrome of Neonatal/Infancy-Onset Diabetes, Congenital Sensorineural Deafness, and Congenital Cataracts. Diabetes, 66(7), 2044-2053. Abstract.  Author URL.  Full text.
Underwood AP, Jones G, Mentasti M, Fry NK, Harrison TG (2013). Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing. BMC Microbiol, 13 Abstract.  Author URL.

Publications by year


In Press

Stals KL, Wakeling M, Baptista J, Caswell R, Parrish A, Rankin J, Tysoe C, Jones G, Gunning AC, Lango Allen H, et al (In Press). Diagnosis of lethal or prenatal-onset autosomal recessive disorders by parental exome sequencing. Prenat Diagn, 38(1), 33-43. Abstract.  Author URL.
De Franco E, Flanagan SE, Yagi T, Abreu D, Mahadevan J, Johnson MB, Jones G, Acosta F, Mulaudzi M, Lek N, et al (In Press). Dominant ER Stress-Inducing WFS1 Mutations Underlie a Genetic Syndrome of Neonatal/Infancy-Onset Diabetes, Congenital Sensorineural Deafness, and Congenital Cataracts. Diabetes, 66(7), 2044-2053. Abstract.  Author URL.  Full text.

2013

Underwood AP, Jones G, Mentasti M, Fry NK, Harrison TG (2013). Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing. BMC Microbiol, 13 Abstract.  Author URL.

Refresh publications

Other

Association of Clinical Genomics member / British Society for Genetic Medicine member

Bioinformatics representative for the ACGS Workforce development committee 2015-2017

OSFA Station writer 2016 – Clinical Bioinformatics [Genomics]

OSFA Assessor 2016 – Clinical Bioinformatics [Genomics]

Short course for Genomic Counsellors and Clinicians 2015 on variant interpretation

STP Clinical Bioinformatics assessor 2015-2016

STEM ambassador, 2016 ongoing BIO2071 course demonstrator 2017-2018 (Statistics with R)

Learning and Teaching in Higher Education (LTHE) Stage 1 - 2018

Back | Edit Profile